2023年5月16日

亞馬遜2023年5月16日,元素生物科學利用組學民主化基因組數據通過提供一個創新的聯合計算模型元素生物科學公司——元素的開發者AVITI™係統,一個創新的擾亂基因組DNA測序平台行業,亞馬遜宣布現在利用一個新的組學特性,Ready2Run工作流,提供簡單、強大,和成本效益分析工作流。技術的結合使客戶選擇他們的測序數據流從AVITI™直接到雲並自動執行後續分析使用亞馬遜組學。亞馬遜組學從亞馬遜網絡服務(AWS)是一個服務,幫助把重擔從存儲、查詢和分析各種組學數據。Ready2Run工作流是一組預構建工作流從第三方軟件公司和開源管道。隻需要點擊幾下或者一個API調用,用戶可以運行預先構建工作流執行分析,如轉換基本調用FASTQ文件、二級分析,如基因表達或變種的召喚,和三級分析蛋白質結構預測等。Ready2Run工作流priced-per-run給客戶可預測的和透明的定價。在亞馬遜上元素的Bases2Fastq Ready2Run工作流組學使客戶流從AVITI測序數據和執行亞馬遜組學分析。這允許客戶訪問可伸縮的雲計算,並行處理多個運行或樣本的能力,和簡單的組合多個下遊二級或三級分析工具在一個平台,同時保持端到端控製他們自己的數據。數據安全是增強AVITI上運行Ubuntu核心,Linux操作係統。“這是快速和容易啟動Bases2Fastq Ready2Run工作流。 We are excited to use this solution to streamline our pipelines and significantly shorten the time (and effort) between our data coming off AVITI and entering secondary analysis,” said Claire Seibold, Director of Software and Data Analytics at FYR Diagnostics. The Bases2Fastq Ready2Run workflows offer a fast and affordable sample demultiplex and FASTQ generation solution. The AVITI system’s dual flow cell capacity enables sequencing of up to six human whole genomes concurrently, each sequenced to a depth of around 30x. The Bases2Fastq Ready2Run workflow enables customers to demultiplex and convert their sequencing data into FASTQ files in less than two hours after completing the run. This process costs less than 1% of the total sequencing cost. By further leveraging the various secondary analysis Ready2Run workflows available in Amazon Omics, the conversion of FASTQ files to BAM or VCF files can be performed within a similar timeframe without incurring significant additional costs. Starting in Q3 2023, customers will also be able to use Elembio Cloud™, a new offering from Element Biosciences, to seamlessly configure orchestrating the automatic launch of Element’s Bases2Fastq Ready2Run workflows using Amazon Omics. “AVITI on Amazon Omics brings customers a cost-effective, scalable, and straightforward sample-to-answer workflow,” said Francisco Garcia, PhD, SVP of Informatics at Element. “Providing users control over their own data is key to Element’s mission to accelerate scientific progress.” “We’re excited to be working with companies like Element Biosciences to offer pre-built workflows as part of the new Ready2Run feature in Amazon Omics,” said Tehsin Syed, General Manager of Health AI, AWS. “Customers can now simply bring their data and run these workflows within minutes, making analysis easier and optimizing costs with predictable pricing.” previous post